Proceedings of the 15th Workshop on Biomedical Natural Language Processing

Kevin Bretonnel Cohen, Dina Demner-Fushman, Sophia Ananiadou, Jun-ichi Tsujii (Editors)

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Berlin, Germany
Association for Computational Linguistics
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Proceedings of the 15th Workshop on Biomedical Natural Language Processing
Kevin Bretonnel Cohen | Dina Demner-Fushman | Sophia Ananiadou | Jun-ichi Tsujii

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A Machine Learning Approach to Clinical Terms Normalization
José Castaño | María Laura Gambarte | Hee Joon Park | Maria del Pilar Avila Williams | David Pérez | Fernando Campos | Daniel Luna | Sonia Benítez | Hernán Berinsky | Sofía Zanetti

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Improved Semantic Representation for Domain-Specific Entities
Mohammad Taher Pilehvar | Nigel Collier

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Identification, characterization, and grounding of gradable terms in clinical text
Chaitanya Shivade | Marie-Catherine de Marneffe | Eric Fosler-Lussier | Albert M. Lai

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Graph-based Semi-supervised Gene Mention Tagging
Golnar Sheikhshab | Elizabeth Starks | Aly Karsan | Anoop Sarkar | Inanc Birol

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Feature Derivation for Exploitation of Distant Annotation via Pattern Induction against Dependency Parses
Dayne Freitag | John Niekrasz

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Inferring Implicit Causal Relationships in Biomedical Literature
Halil Kilicoglu

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SnapToGrid: From Statistical to Interpretable Models for Biomedical Information Extraction
Marco A. Valenzuela-Escárcega | Gus Hahn-Powell | Dane Bell | Mihai Surdeanu

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Character based String Kernels for Bio-Entity Relation Detection
Ritambhara Singh | Yanjun Qi

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Disambiguation of entities in MEDLINE abstracts by combining MeSH terms with knowledge
Amy Siu | Patrick Ernst | Gerhard Weikum

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Using Distributed Representations to Disambiguate Biomedical and Clinical Concepts
Stéphan Tulkens | Simon Suster | Walter Daelemans

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Unsupervised Document Classification with Informed Topic Models
Timothy Miller | Dmitriy Dligach | Guergana Savova

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Vocabulary Development To Support Information Extraction of Substance Abuse from Psychiatry Notes
Sumithra Velupillai | Danielle L. Mowery | Mike Conway | John Hurdle | Brent Kious

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Syntactic analyses and named entity recognition for PubMed and PubMed Central — up-to-the-minute
Kai Hakala | Suwisa Kaewphan | Tapio Salakoski | Filip Ginter

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Improving Temporal Relation Extraction with Training Instance Augmentation
Chen Lin | Timothy Miller | Dmitriy Dligach | Steven Bethard | Guergana Savova

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Using Centroids of Word Embeddings and Word Mover’s Distance for Biomedical Document Retrieval in Question Answering
Georgios-Ioannis Brokos | Prodromos Malakasiotis | Ion Androutsopoulos

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Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway
Michael Spranger | Sucheendra Palaniappan | Samik Gosh

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Construction of a Personal Experience Tweet Corpus for Health Surveillance
Keyuan Jiang | Ricardo Calix | Matrika Gupta

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Modelling the Combination of Generic and Target Domain Embeddings in a Convolutional Neural Network for Sentence Classification
Nut Limsopatham | Nigel Collier

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PubTermVariants: biomedical term variants and their use for PubMed search
Lana Yeganova | Won Kim | Sun Kim | Rezarta Islamaj Doğan | Wanli Liu | Donald C Comeau | Zhiyong Lu | W John Wilbur

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This before That: Causal Precedence in the Biomedical Domain
Gus Hahn-Powell | Dane Bell | Marco A. Valenzuela-Escárcega | Mihai Surdeanu

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Syntactic methods for negation detection in radiology reports in Spanish
Viviana Cotik | Vanesa Stricker | Jorge Vivaldi | Horacio Rodriguez

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How to Train good Word Embeddings for Biomedical NLP
Billy Chiu | Gamal Crichton | Anna Korhonen | Sampo Pyysalo

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An Information Foraging Approach to Determining the Number of Relevant Features
Brian Connolly | Benjamin Glass | John Pestian

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Assessing the Feasibility of an Automated Suggestion System for Communicating Critical Findings from Chest Radiology Reports to Referring Physicians
Brian E. Chapman | Danielle L. Mowery | Evan Narasimhan | Neel Patel | Wendy Chapman | Marta Heilbrun

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Building a dictionary of lexical variants for phenotype descriptors
Simon Kocbek | Tudor Groza

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Applying deep learning on electronic health records in Swedish to predict healthcare-associated infections
Olof Jacobson | Hercules Dalianis

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Identifying First Episodes of Psychosis in Psychiatric Patient Records using Machine Learning
Genevieve Gorrell | Sherifat Oduola | Angus Roberts | Tom Craig | Craig Morgan | Rob Stewart

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Relation extraction from clinical texts using domain invariant convolutional neural network
Sunil Sahu | Ashish Anand | Krishnadev Oruganty | Mahanandeeshwar Gattu