Extracting Drug-Drug Interactions with Attention CNNs
Masaki Asada, Makoto Miwa, Yutaka Sasaki
Abstract
We propose a novel attention mechanism for a Convolutional Neural Network (CNN)-based Drug-Drug Interaction (DDI) extraction model. CNNs have been shown to have a great potential on DDI extraction tasks; however, attention mechanisms, which emphasize important words in the sentence of a target-entity pair, have not been investigated with the CNNs despite the fact that attention mechanisms are shown to be effective for a general domain relation classification task. We evaluated our model on the Task 9.2 of the DDIExtraction-2013 shared task. As a result, our attention mechanism improved the performance of our base CNN-based DDI model, and the model achieved an F-score of 69.12%, which is competitive with the state-of-the-art models.- Anthology ID:
- W17-2302
- Volume:
- BioNLP 2017
- Month:
- August
- Year:
- 2017
- Address:
- Vancouver, Canada,
- Venues:
- BioNLP | WS
- SIG:
- SIGBIOMED
- Publisher:
- Association for Computational Linguistics
- Note:
- Pages:
- 9–18
- Language:
- URL:
- https://www.aclweb.org/anthology/W17-2302
- DOI:
- 10.18653/v1/W17-2302
- PDF:
- http://aclanthology.lst.uni-saarland.de/W17-2302.pdf